PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G116400.1
Common NameB456_002G116400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 74aa    MW: 8681.24 Da    PI: 9.8093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G116400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-0925661055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        + RR++i +++  L++l+P +    +k  +Ka +L + ++Y++sLq
  Gorai.002G116400.1 25 KVRREKISERMKYLQDLVPGC----NKITDKAGMLNEIINYVQSLQ 66
                        78*******************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.6781565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-141771IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-52171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-72470No hitNo description
Gene3DG3DSA:4.10.280.101.1E-132571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-72566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MIKFKAFDLG CHQIACRVWK DYYAKVRREK ISERMKYLQD LVPGCNKITD KAGMLNEIIN  60
YVQSLQRQVE VKQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431461e-57AC243146.1 Gossypium hirsutum clone MX073K14-jni, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491366.17e-47PREDICTED: GTP-binding protein SAR1-like isoform X2
RefseqXP_012491372.17e-47PREDICTED: GTP-binding protein SAR1-like isoform X2
RefseqXP_012491379.17e-47PREDICTED: GTP-binding protein SAR1-like isoform X2
SwissprotQ8GY611e-23BH063_ARATH; Transcription factor bHLH63
TrEMBLA0A0D2QBJ21e-48A0A0D2QBJ2_G
STRINGVIT_03s0038g04760.t013e-22(Vitis vinifera)
STRINGPOPTR_0009s12000.13e-22(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16325314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.19e-25cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]